Reference

Compose

compose_v1.4.2() compose()

Compose BioCompute Object (v1.4.2)

Compose Domains

compose_tlf_v1.4.2() compose_tlf()

Compose BioCompute Object - Top Level Fields (v1.4.2)

compose_provenance_v1.4.2() compose_provenance()

Compose BioCompute Object - Provenance Domain (v1.4.2)

compose_usability_v1.4.2() compose_usability()

Compose BioCompute Object - Usability Domain (v1.4.2)

compose_extension_v1.4.2() compose_extension()

Compose BioCompute Object - Extension Domain (v1.4.2)

compose_fhir_v1.4.2() compose_fhir()

Compose BioCompute Object - FHIR Extension (v1.4.2)

compose_scm_v1.4.2() compose_scm()

Compose BioCompute Object - SCM Extension (v1.4.2)

compose_description_v1.4.2() compose_description()

Compose BioCompute Object - Description Domain (v1.4.2)

compose_execution_v1.4.2() compose_execution()

Compose BioCompute Object - Execution Domain (v1.4.2)

compose_parametric_v1.4.2() compose_parametric()

Compose BioCompute Object - Parametric Domain (v1.4.2)

compose_io_v1.4.2() compose_io()

Compose BioCompute Object - Input and Output Domain (v1.4.2)

compose_error_v1.4.2() compose_error()

Compose BioCompute Object - Error Domain (v1.4.2)

Convert

convert_json()

Convert BioCompute Object or domain to JSON string

convert_yaml()

Convert BioCompute Object or domain to YAML string

Export

export_json()

Export BioCompute Object as JSON

export_pdf()

Export BioCompute Object as PDF

export_html()

Export BioCompute Object as HTML

export_word()

Export BioCompute Object as Word document

export_sevenbridges()

Export BioCompute Object to Seven Bridges Platforms

Validate

validate_checksum_v1.4.2() validate_checksum()

BioCompute Objects checksum validator (v1.4.2)

validate_schema_v1.4.2() validate_schema()

BioCompute Objects schema validator (v1.4.2)

Utilities

generate_id()

Generate ID for the BioCompute Object

generate_example()

Generate example BioCompute Objects

is_bco()

Is this a BCO object?

is_domain()

Is this a domain object?

read_bco()

Parse Biocompute Object From JSON File to R Object

versions()

BioCompute Object specification versions