Compose BioCompute Object - Parametric Domain (v1.4.2)

Non-default parameters customizing the computational flow which can affect the output of the calculations (domain definition).

compose_parametric_v1.4.2(df = NULL)

compose_parametric(df = NULL)

Arguments

df

Data frame. Variables include param (parameter names), value (value of the parameters), and step (step number for each parameter).

Value

A list of class bco.domain

Examples

df_parametric <- data.frame(
  "param" = c(
    "seed", "minimum_match_len",
    "divergence_threshold_percent",
    "minimum_coverage", "freq_cutoff"
  ),
  "value" = c("14", "66", "0.30", "15", "0.10"),
  "step" = c(1, 1, 1, 2, 2)
)

compose_parametric(df_parametric) %>% convert_json()
#> [
#>   {
#>     "param": "seed",
#>     "value": "14",
#>     "step": "1"
#>   },
#>   {
#>     "param": "minimum_match_len",
#>     "value": "66",
#>     "step": "1"
#>   },
#>   {
#>     "param": "divergence_threshold_percent",
#>     "value": "0.30",
#>     "step": "1"
#>   },
#>   {
#>     "param": "minimum_coverage",
#>     "value": "15",
#>     "step": "2"
#>   },
#>   {
#>     "param": "freq_cutoff",
#>     "value": "0.10",
#>     "step": "2"
#>   }
#> ]