Export BioCompute Object to Seven Bridges Platforms

export_sevenbridges(
  file,
  name = NULL,
  project = NULL,
  token = NULL,
  base_url = "https://api.sbgenomics.com/v2/",
  overwrite = TRUE
)

Arguments

file: Path to the BCO file.
name: Name of the BCO file to create on the platform. Defaults to the name of the input file.
project: Project to upload (export) the BCO file to. Format: "username/project".
token: API auth token for the platform. Generate the token from the platform's Developer Dashboard.
base_url: API base URL. Get the base URL from the platform's Developer Dashboard.
overwrite: If TRUE, will overwrite the existing BCO file with the same name in that project (if any). If FALSE, will not overwrite.

Value

Response of the file upload request

Examples

if (FALSE) {
file_json <- tempfile(fileext = ".json")
generate_example("HCV1a") %>%
  convert_json() %>%
  export_json(file_json)

try(
  export_sevenbridges(
    file_json,
    project = "rosalind_franklin/project_name",
    token = "your_api_auth_token",
    base_url = "https://cgc-api.sbgenomics.com/v2/"
  )
)
}