Export BioCompute Object to Seven Bridges Platforms

export_sevenbridges(
  file,
  name = NULL,
  project = NULL,
  token = NULL,
  base_url = "https://api.sbgenomics.com/v2/",
  overwrite = TRUE
)

Arguments

file

Path to the BCO file.

name

Name of the BCO file to create on the platform. Defaults to the name of the input file.

project

Project to upload (export) the BCO file to. Format: "username/project".

token

API auth token for the platform. Generate the token from the platform's Developer Dashboard.

base_url

API base URL. Get the base URL from the platform's Developer Dashboard.

overwrite

If TRUE, will overwrite the existing BCO file with the same name in that project (if any). If FALSE, will not overwrite.

Value

Response of the file upload request

Examples

# \donttest{ file_json <- tempfile(fileext = ".json") generate_example("HCV1a") %>% convert_json() %>% export_json(file_json) export_sevenbridges( file_json, project = "rosalind_franklin/project_name", token = "your_api_auth_token", base_url = "https://cgc-api.sbgenomics.com/v2/" )
#> ══ Starting the upload ════════════════════════════════════════════════════════════════════════════════════════════════════
#> Error in export_sevenbridges(file_json, project = "rosalind_franklin/project_name", token = "your_api_auth_token", base_url = "https://cgc-api.sbgenomics.com/v2/"): The API token format is incorrect.
# }