Function reference • sevenbridges-r

API Client API client.
`get_token()` `misc_get_token()`	Opens web browser to copy the auth token
`api()`	Core HTTP logic for Seven Bridges API
`response()` `response<-`()	Get raw response from an Item object
Authentication Authentication.
`Auth-class`	Class Auth
`sbg_get_env()`	Set authentication environment variables for Seven Bridges API
`sbg_set_env()`	Set authentication environment variables for Seven Bridges API
Project Managing projects.
`project_details()`	Returns the details of the project
`project_members()`	Returns a list of all users invited to the project and their privileges
Files/Folders File and folder operations.
`FileList()`	FileList Class
`FilesList()`	Class Files
`download()`	Download files
`delete()`	Delete files or folders
`upload_complete_all()`	Reports the complete file upload
`upload_complete_part()`	Reports the completion of the part upload
`upload_delete()`	Abort the upload
`upload_info_part()`	Returns AWS S3 signed URL for a part of the file upload
`upload_info()`	Returns upload information for the ongoing upload
`upload_init()`	Initializes the upload of the specified file
`set_tag()` `add_tag()`	Set file tags
Tasks Managing tasks.
`batch()`	batch function for task batch execution
`setTaskHook()` `getTaskHook()`	set task function hook
File Systems File systems class.
`FS-class`	FS class
CLI Uploader Upload files with command line uploader.
`get_uploader()` `misc_get_uploader()`	Download Seven Bridges command line uploader and extract to a specified directory
`cli_list_projects()`	List projects using Seven Bridges command line uploader
`cli_list_tags()`	List all the tags in project using Seven Bridges command line uploader
`cli_upload()` `misc_upload_cli()`	Upload files using Seven Bridges command line uploader
Common Workflow Language Creating CWL tools and workflows in R.
`App-class`	Class App
`convert_app()` `appType()`	Convert App or a CWL JSON file to Tool or Flow object
`input_matrix()` `output_matrix()`	Get input/output matrix out of JSON CWL file directly
`Tool-class`	Class Tool
`test_tool_rabix()`	Test tools in rabix/rabix-devel (DEPRECATED)
`test_tool_cwlrun()`	Test tools with cwl-runner
`test_tool_bunny()`	Test tools in rabix/bunny
`link()`	link two nodes to form a new Workflow
`link_what()`	List possible linking methods
`Flow()` `+`(<Tool>,<Tool>) `+`(<WorkflowStepList>,<Tool>) `+`(<WorkflowStepList>,<WorkflowStepList>) `+`(<App>,<App>) `+`(<WorkflowStepList>,<App>) `%>>%`	Build workflow
`WorkflowStepInputList()` `WorkflowStepOutputList()` `WorkflowStepList()`	WorkflowStepInputList
`WorkflowOutputParameterList()`	Workflow
`CWL-class`	Class CWL
`get_cwl_class()`	Get class from CWL JSON file
`Process-class`	Process Class
`FileDefList()` `EnvironmentDefList()` `ProcessRequirementList()`	ProcessRequirement Class
`InputParameterList()` `OutputParameterList()`	Paramter class (reference class)
`CommandInputParameter-class`	CommandInputParameter Class
`CommandInputSchema-class`	CommandInputSchema Class
`CommandLineBinding-class`	CommandLineBinding Class
`CommandLineTool-class`	CommandLineTool Class
`CommandOutputBinding-class`	CommandOutputBinding Class
`CommandOutputParameter-class`	CommandOutputParameter Class
`CommandOutputSchema-class`	CommandOutputSchema
`Expression-class`	Expression Class
`ExpressionTool-class`	ExpressionTool Class
`Handler-class`	Handler instance
`docker()` `requirements()` `fileDef()`	Rabix specifc Requirements
`DSCList()`	DSC list
`CCBList()`	characterORCommandLineBindingList Class
`CLB`	Shorthand functions for cwl packages constructors
`SchemaList()` `SchemaDefList()`	SchemaList
`PrimitiveSingleEnum-class`	Pre-defiend enums
`Binding-class`	Binding
Utilities Utility functions.
`sevenbridges-package`	Seven Bridges Platform API Client and CWL Tool Builder in R
`Item-class`	Class Item
`misc_make_metadata()`	Meta schema
`addIdNum()`	add `#` prefix to id
`asList()`	Convert a object slots/fields to a list, json, or yaml file
`set_test_env()`	Set testing env
`setListClass()`	List Class generator.

Reference

API Client

Authentication

Project

Files/Folders

Tasks

File Systems

CLI Uploader

Common Workflow Language

Utilities