Get label for inputs
get_inputs_label(inputs)Parsed inputs
Vector of input labels
# inputs represented by a dictionary
system.file("cwl/sbg/workflow/rnaseq-salmon.json", package = "tidycwl") %>%
read_cwl_json() %>%
parse_inputs() %>%
get_inputs_label()
#> [1] "Transcriptome FASTA or Salmon index archive"
#> [2] "FASTQ Read Files"
#> [3] "Gene map or GTF file"
#> [4] "Maximum number of parallel jobs"
#> [5] "K-mer length"
#> [6] "GENCODE FASTA"
#> [7] "Keep duplicates"
#> [8] "Write unmapped names"
#> [9] "Write mappings"
#> [10] "VBEM prior"
#> [11] "Use Variational Bayesian optimization"
#> [12] "Thinning factor"
#> [13] "Strict intersect"
#> [14] "Sequence-specific bias correction"
#> [15] "Reduce GC memory"
#> [16] "Range factorization bins"
#> [17] "Quasi coverage"
#> [18] "Position bias"
#> [19] "Per transcript prior"
#> [20] "Number of pre auxiliary model samples"
#> [21] "Number of Gibbs samples"
#> [22] "Number of bootstraps"
#> [23] "Number of bias samples"
#> [24] "Number of auxiliary model samples"
#> [25] "No length correction"
#> [26] "No fragment length distribution"
#> [27] "No effective length correction"
#> [28] "No bias length threshold"
#> [29] "Minimum assigned fragments"
#> [30] "Meta"
#> [31] "Maximum read occurence"
#> [32] "Maximum (S)MEM occurance"
#> [33] "Initialize uniform parameters"
#> [34] "Incompatible prior probability"
#> [35] "GC size sample"
#> [36] "GC bias correction"
#> [37] "Forgetting factor"
#> [38] "Fragment length standard deviation"
#> [39] "Mean fragment length"
#> [40] "Maximum fragment length"
#> [41] "Faster mapping"
#> [42] "Dump equivalence class weights"
#> [43] "Dump equivalence class counts"
#> [44] "Discard orphans in Quasi-mapping mode"
#> [45] "Consistent hits"
#> [46] "Bias speed sample"
#> [47] "Alternative initialization mode"
#> [48] "Allow orphans in FMD mode"
# inputs represented by a list
system.file("cwl/sbg/workflow/rnaseq-salmon.cwl", package = "tidycwl") %>%
read_cwl_yaml() %>%
parse_inputs() %>%
get_inputs_label()
#> [1] "Transcriptome FASTA or Salmon index archive"
#> [2] "FASTQ Read Files"
#> [3] "Gene map or GTF file"
#> [4] "Maximum number of parallel jobs"
#> [5] "K-mer length"
#> [6] "GENCODE FASTA"
#> [7] "Keep duplicates"
#> [8] "Write unmapped names"
#> [9] "Write mappings"
#> [10] "VBEM prior"
#> [11] "Use Variational Bayesian optimization"
#> [12] "Thinning factor"
#> [13] "Strict intersect"
#> [14] "Sequence-specific bias correction"
#> [15] "Reduce GC memory"
#> [16] "Range factorization bins"
#> [17] "Quasi coverage"
#> [18] "Position bias"
#> [19] "Per transcript prior"
#> [20] "Number of pre auxiliary model samples"
#> [21] "Number of Gibbs samples"
#> [22] "Number of bootstraps"
#> [23] "Number of bias samples"
#> [24] "Number of auxiliary model samples"
#> [25] "No length correction"
#> [26] "No fragment length distribution"
#> [27] "No effective length correction"
#> [28] "No bias length threshold"
#> [29] "Minimum assigned fragments"
#> [30] "Meta"
#> [31] "Maximum read occurence"
#> [32] "Maximum (S)MEM occurance"
#> [33] "Initialize uniform parameters"
#> [34] "Incompatible prior probability"
#> [35] "GC size sample"
#> [36] "GC bias correction"
#> [37] "Forgetting factor"
#> [38] "Fragment length standard deviation"
#> [39] "Mean fragment length"
#> [40] "Maximum fragment length"
#> [41] "Faster mapping"
#> [42] "Dump equivalence class weights"
#> [43] "Dump equivalence class counts"
#> [44] "Discard orphans in Quasi-mapping mode"
#> [45] "Consistent hits"
#> [46] "Bias speed sample"
#> [47] "Alternative initialization mode"
#> [48] "Allow orphans in FMD mode"