Example data frame to be used with in the file_pickers_demo_app.R

Usage

file_picker_example_data

Format

## `file_picker_example_data` A data frame with 8 rows and 24 columns:

name: File name.
id: File ID.
extension: File extension.
size: File size in bytes.
sample_id: A human readable identifier for a sample or specimen, which can contain some metadata information.
tags: Platform tags attached to the file.
origin_task_id: The id of a Platform task that generated a file.
path: Absolute path to a file.
parent_id: ID of a parent directory.
experimental_strategy: The method or protocol used to perform the laboratory analysis.
library_id: An identifier for the sequencing library preparation.
platform: The version (manufacturer, model, etc.) of the technology that was used for sequencing or assaying.
platform_unit_id: An identifier for lanes (Illumina), or for slides (SOLiD) in the case a library was split and ran over multiple lanes on the flow cell or slides. The platform unit ID refers to the lane ID or the slide ID.
file_segment_number: If the sequencing reads for a single library, sample and lane are divided into multiple (smaller) files, the File segment number is used to enumerate these. Otherwise, this field can be left blank.
quality_scale: For raw reads, this value denotes the sequencing technology and quality format.For BAM and SAM files, this value should always be ‘Sanger’.
paired_end: For paired-end sequencing, this value determines the end of the sequenced fragment. For single-end sequencing no value is needed.
reference_genome: The reference assembly (such as HG19 or GRCh37) to which the nucleotide sequence of a case can be aligned.
investigation: A value denoting the project or study that generated the data.
species: A group of organisms having some common characteristic or qualities, that differ from all other groups of organisms and are capable of breeding and producing a fertile offspring.
batch_number: Assigned distinctive identification code that signifies grouping.
case_id: A human-readable identifier, such as a number or a string for a subject that has taken part in the investigation or study.
sample_type: The type of material taken from a biological entity for testing, diagnosis, propagation, treatment, or research purposes. This includes tissues, body fluids, cells, organs, embryos, body excretory products, etc.
md5_sum: A 32-character hexadecimal number that is computed on a file.
sbg_public_files_category: SBG Platform public files category.